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curatedAdipoRNA

This is the development version of curatedAdipoRNA; for the stable release version, see curatedAdipoRNA.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)


Bioconductor version: Development (3.24)

A curated dataset of RNA-Seq samples. The samples are MDI-induced pre-phagocytes (3T3-L1) at different time points/stage of differentiation. The package document the data collection, pre-processing and processing. In addition to the documentation, the package contains the scripts that was used to generated the data.

Author: Mahmoud Ahmed [aut, cre] ORCID iD ORCID: 0000-0002-4377-6541

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>

Citation (from within R, enter citation("curatedAdipoRNA")):

Mahmoud Ahmed. curatedAdipoRNA: A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1). doi:10.18129/B9.bioc.curatedAdipoRNA, R package version 1.29.0, https://bioconductor.org/packages/curatedAdipoRNA.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("curatedAdipoRNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedAdipoRNA")
Using curatedAdipoRNA HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews ExperimentData, GEO, RNASeqData, SequencingData
Version1.29.0
In Bioconductor sinceBioC 3.9 (R-3.6) (7.5 years)
License GPL-3
Depends R (>= 3.6), SummarizedExperiment
Imports
System Requirements
URLhttps://github.com/MahShaaban/curatedAdipoRNA
Bug Reportshttps://github.com/MahShaaban/curatedAdipoRNA/issues
See More
Suggests knitr, rmarkdown, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2, S4Vectors
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Depends On Me
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Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedAdipoRNA_1.29.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/curatedAdipoRNA
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/curatedAdipoRNA
Package Short Url https://bioconductor.org/packages/curatedAdipoRNA/
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