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aracne.networks

This is the development version of aracne.networks; for the stable release version, see aracne.networks.

ARACNe-inferred gene networks from TCGA tumor datasets


Bioconductor version: Development (3.20)

This package contains ARACNe-inferred networks from TCGA tumor datasets. It also contains a function to export them into plain-text format.

Author: Federico M. Giorgi

Maintainer: Federico M. Giorgi <federico.giorgi at gmail.com>, Mariano Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("aracne.networks")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("aracne.networks")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("aracne.networks")
Using aracne.networks PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews CancerData, ExperimentData, Genome, Homo_sapiens_Data
Version 1.31.0
License file LICENSE
Depends R (>= 3.3), viper
Imports
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package aracne.networks_1.31.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/aracne.networks
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/aracne.networks
Package Short Url https://bioconductor.org/packages/aracne.networks/
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