WeberDivechaLCdata

This is the development version of WeberDivechaLCdata; for the stable release version, see WeberDivechaLCdata.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16

Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples

Bioconductor version: Development (3.24)

Spatially-resolved transcriptomics (SRT) and single-nucleus RNA-sequencing (snRNA-seq) data from the locus coeruleus (LC) in postmortem human brain samples. Data were generated with the 10x Genomics Visium SRT and 10x Genomics Chromium snRNA-seq platforms. Datasets are stored in SpatialExperiment and SingleCellExperiment formats.

Author: Lukas M. Weber [aut, cre] ORCID: 0000-0002-3282-1730 , Heena R. Divecha [aut] ORCID: 0000-0002-1959-0675

Maintainer: Lukas M. Weber <weberlm3 at gmail.com>

Citation (from within R, enter citation("WeberDivechaLCdata")):

Lukas M. Weber, Heena R. Divecha. WeberDivechaLCdata: Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples. doi:10.18129/B9.bioc.WeberDivechaLCdata, R package version 1.15.1, https://bioconductor.org/packages/WeberDivechaLCdata.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("WeberDivechaLCdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("WeberDivechaLCdata")

WeberDivechaLCdata package	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, RNASeqData, ReproducibleResearch, SequencingData, SingleCellData, SpatialData
Version	1.15.1
In Bioconductor since	BioC 3.16 (R-4.2) (4 years)
License	MIT + file LICENSE
Depends	ExperimentHub, SpatialExperiment, SingleCellExperiment
Imports	utils
System Requirements
URL	https://github.com/lmweber/WeberDivechaLCdata
Bug Reports	https://github.com/lmweber/WeberDivechaLCdata/issues

Suggests	BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	BatchSVG, nnSVG
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	WeberDivechaLCdata_1.15.1.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/WeberDivechaLCdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/WeberDivechaLCdata
Package Short Url	https://bioconductor.org/packages/WeberDivechaLCdata/
Package Downloads Report	Download Stats