TENxPBMCData

This is the development version of TENxPBMCData; for the stable release version, see TENxPBMCData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

PBMC data from 10X Genomics

Bioconductor version: Development (3.24)

Single-cell RNA-seq data for on PBMC cells, generated by 10X Genomics.

Author: Kasper D. Hansen [aut], Davide Risso [aut], Milan Malfait [ctb], Jeroen Gilis [ctb], Theodore Killian [ctb], Murat Cem Kose [ctb], Chong Tang [ctb], Teun van den Brand [ctb], Dania Machlab [ctb], Stephanie Hicks [aut, cre]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("TENxPBMCData")):

Kasper D. Hansen, Davide Risso, Stephanie Hicks. TENxPBMCData: PBMC data from 10X Genomics. doi:10.18129/B9.bioc.TENxPBMCData, R package version 1.31.0, https://bioconductor.org/packages/TENxPBMCData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("TENxPBMCData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxPBMCData")

Obtaining scRNA-seq data on PBMCs from 10X Genomics	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version	1.31.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	CC BY 4.0
Depends	SingleCellExperiment, HDF5Array
Imports	AnnotationHub, ExperimentHub
System Requirements
URL

Suggests	rmarkdown, knitr, BiocStyle, snow, BiocFileCache, BiocParallel
Linking To
Enhances
Depends On Me	scrapbook, SingleRBook
Imports Me	singleCellTK
Suggests Me	adverSCarial, ASURAT, celda, concordexR, decontX, ExperimentSubset, glmGamPoi, GSVA, iSEE, mbkmeans, scBatchQC, scGraphVerse, schex, scone, scry, Seqtometry, sketchR, transformGamPoi
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TENxPBMCData_1.31.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/TENxPBMCData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TENxPBMCData
Package Short Url	https://bioconductor.org/packages/TENxPBMCData/
Package Downloads Report	Download Stats