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SpatialDatasets

This is the development version of SpatialDatasets; for the stable release version, see SpatialDatasets.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18

Collection of spatial omics datasets

DOI: 10.18129/B9.bioc.SpatialDatasets

Bioconductor version: Development (3.24)

This is a collection of publically available spatial omics datasets. Where possible we have curated these datasets as either SpatialExperiments, MoleculeExperiments or CytoImageLists and included annotations of the sample characteristics.

Author: Farhan Ameen [aut], Nick Robertson [aut], Alex Qin [aut], Shreya Rao [aut], Elijah Willie [aut], Ellis Patrick [aut, cre]

Maintainer: Ellis Patrick <ellis.patrick at sydney.edu.au>

Citation (from within R, enter citation("SpatialDatasets")):

Farhan Ameen, Nick Robertson, Alex Qin, Shreya Rao, Elijah Willie, Ellis Patrick. SpatialDatasets: Collection of spatial omics datasets. doi:10.18129/B9.bioc.SpatialDatasets, R package version 1.11.0, https://bioconductor.org/packages/SpatialDatasets.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("SpatialDatasets")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SpatialDatasets")

Details

Package Archives

Follow Installation instructions to use this package in your R session.