• Home
• Bioconductor 3.24
• Experiment Packages
• RTCGA.CNV (development version)

RTCGA.CNV

This is the development version of RTCGA.CNV; for the stable release version, see RTCGA.CNV.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project

DOI: 10.18129/B9.bioc.RTCGA.CNV

Bioconductor version: Development (3.24)

Package provides CNV (based on Merge snp) datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving +Data+Using+the+Data+Matrix. Data from 2015-11-01 snapshot.

Author: Przemyslaw Biecek <przemyslaw.biecek at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.CNV")):

Przemyslaw Biecek. RTCGA.CNV: CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project. doi:10.18129/B9.bioc.RTCGA.CNV, R package version 1.39.0, https://bioconductor.org/packages/RTCGA.CNV.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("RTCGA.CNV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.CNV")

Details

Package Archives

Follow Installation instructions to use this package in your R session.