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MMDiffBamSubset

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of MMDiffBamSubset; for the stable release version, see MMDiffBamSubset.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12

Example ChIP-Seq data for the MMDiff package

DOI: 10.18129/B9.bioc.MMDiffBamSubset

Bioconductor version: Development (3.24)

Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS

Author: Gabriele Schweikert

Maintainer: Gabriele Schweikert <G.Schweikert at ed.ac.uk>

Citation (from within R, enter citation("MMDiffBamSubset")):

Gabriele Schweikert. MMDiffBamSubset: Example ChIP-Seq data for the MMDiff package. doi:10.18129/B9.bioc.MMDiffBamSubset, R package version 1.49.1, https://bioconductor.org/packages/MMDiffBamSubset.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("MMDiffBamSubset")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Details

Package Archives

Follow Installation instructions to use this package in your R session.