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LRcellTypeMarkers

This is the development version of LRcellTypeMarkers; for the stable release version, see LRcellTypeMarkers.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

Marker gene information for LRcell R Bioconductor package

DOI: 10.18129/B9.bioc.LRcellTypeMarkers

Bioconductor version: Development (3.24)

This is an external ExperimentData package for LRcell. This data package contains the gene enrichment scores calculated from scRNA-seq dataset which indicates the gene enrichment of each cell type in certain brain region. LRcell package is used to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. For more details, please visit: https://github.com/marvinquiet/LRcell.

Author: Wenjing Ma [cre, aut] ORCID: 0000-0001-8757-651X

Maintainer: Wenjing Ma <wenjing.ma at emory.edu>

Citation (from within R, enter citation("LRcellTypeMarkers")):

Wenjing Ma. LRcellTypeMarkers: Marker gene information for LRcell R Bioconductor package. doi:10.18129/B9.bioc.LRcellTypeMarkers, R package version 1.21.0, https://bioconductor.org/packages/LRcellTypeMarkers.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("LRcellTypeMarkers")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LRcellTypeMarkers")

Details

Package Archives

Follow Installation instructions to use this package in your R session.