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HarmonizedTCGAData

This is the development version of HarmonizedTCGAData; for the stable release version, see HarmonizedTCGAData.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

Processed Harmonized TCGA Data of Five Selected Cancer Types


Bioconductor version: Development (3.24)

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

Author: Tianle Ma

Maintainer: Tianle Ma <tianlema at buffalo.edu>

Citation (from within R, enter citation("HarmonizedTCGAData")):

Tianle Ma. HarmonizedTCGAData: Processed Harmonized TCGA Data of Five Selected Cancer Types. doi:10.18129/B9.bioc.HarmonizedTCGAData, R package version 1.35.0, https://bioconductor.org/packages/HarmonizedTCGAData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("HarmonizedTCGAData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HarmonizedTCGAData")
Patient Affinity Matrices Derived from Harmonized TCGA Dataset HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews CancerData, ExperimentData, ReproducibleResearch
Version1.35.0
In Bioconductor sinceBioC 3.6 (R-3.4) (9 years)
License GPL-3
Depends R (>= 3.4.0)
Imports ExperimentHub
System Requirements
URL
See More
Suggests AnnotationHub, knitr, rmarkdown, igraph, survival, ANF, stats, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HarmonizedTCGAData_1.35.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/HarmonizedTCGAData
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/HarmonizedTCGAData
Package Short Url https://bioconductor.org/packages/HarmonizedTCGAData/
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