GSE103322

DOI: 10.18129/B9.bioc.GSE103322    

This is the development version of GSE103322; to use it, please install the devel version of Bioconductor.

GEO accession data GSE103322 as a SingleCellExperiment

Bioconductor version: Development (3.14)

Single cell RNA-Seq data for 5902 cells from 18 patients with oral cavity head and neck squamous cell carcinoma available as GEO accession [GSE103322] (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE103322). GSE103322 data have been parsed into a SincleCellExperiment object available in ExperimentHub.

Author: Mariano Alvarez [aut, cre]

Maintainer: Mariano Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("GSE103322")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GSE103322")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSE103322")

 

HTML R Script scRNASeq HNSC data using Bioconductor's ExperimentHub
PDF   Reference Manual

Details

biocViews CancerData, DNASeqData, ExperimentData, ExperimentHub, ExpressionData, GEO, Genome, Homo_sapiens_Data, RNASeqData, SingleCellData
Version 0.99.1
License Artistic-2.0
Depends Biobase, GEOquery
Imports
LinkingTo
Suggests ExperimentHub(>= 0.99.6), knitr, BiocStyle, rmarkdown, SummarizedExperiment, SingleCellExperiment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GSE103322_0.99.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/GSE103322
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GSE103322
Package Short Url https://bioconductor.org/packages/GSE103322/
Package Downloads Report Download Stats

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