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ConnectivityMap

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of ConnectivityMap; for the stable release version, see ConnectivityMap.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

DOI: 10.18129/B9.bioc.ConnectivityMap

Bioconductor version: Development (3.24)

The Broad Institute's Connectivity Map (cmap02) is a "large reference catalogue of gene-expression data from cultured human cells perturbed with many chemicals and genetic reagents", containing more than 7000 gene expression profiles and 1300 small molecules.

Author: Paul Shannon

Maintainer: Paul Shannon<pshannon at systemsbiology.org>

Citation (from within R, enter citation("ConnectivityMap")):

Paul Shannon. ConnectivityMap: Functional connections between drugs, genes and diseases as revealed by common gene-expression changes. doi:10.18129/B9.bioc.ConnectivityMap, R package version 1.49.1, https://bioconductor.org/packages/ConnectivityMap.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("ConnectivityMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Details

Package Archives

Follow Installation instructions to use this package in your R session.