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AshkenazimSonChr21

This is the development version of AshkenazimSonChr21; for the stable release version, see AshkenazimSonChr21.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample


Bioconductor version: Development (3.24)

SonVariantsChr21 is a dataset of annotated genomic variants coming from Complete Genomics whole genome sequencing. Data comes from GIAB project, Ashkenazim Trio, sample HG002 run 1. Both vcf and annotated data frame are provided.

Author: Tomasz Stokowy

Maintainer: Who to complain to <tomasz.stokowy at k2.uib.no>

Citation (from within R, enter citation("AshkenazimSonChr21")):

Tomasz Stokowy. AshkenazimSonChr21: Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample. doi:10.18129/B9.bioc.AshkenazimSonChr21, R package version 1.43.0, https://bioconductor.org/packages/AshkenazimSonChr21.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("AshkenazimSonChr21")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AshkenazimSonChr21")
RareVariantVis PDF R Script
Reference ManualPDF

Details

biocViews ExperimentData, GenomicVariation, Sequencing, WholeGenome
Version1.43.0
In Bioconductor sinceBioC 3.2 (R-3.2) (11 years)
License Artistic-2.0
Depends
Imports
System Requirements
URL
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Suggests knitr, VariantAnnotation
Linking To
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Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package AshkenazimSonChr21_1.43.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/AshkenazimSonChr21
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/AshkenazimSonChr21
Package Short Url https://bioconductor.org/packages/AshkenazimSonChr21/
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