MPO.db
This is the development version of MPO.db; for the stable release version, see MPO.db.
A set of annotation maps describing the Mouse Phenotype Ontology
Bioconductor version: Development (3.19)
We have developed the human disease ontology R package HDO.db, which provides the semantic relationship between human diseases. Relying on the DOSE and GOSemSim packages we developed, we can carry out disease enrichment and semantic similarity analyses. Many biological studies are achieved through mouse models, and a large number of data indicate the association between genotypes and phenotypes or diseases. The study of model organisms can be transformed into useful knowledge about normal human biology and disease to facilitate treatment and early screening for diseases. Organism-specific genotype-phenotypic associations can be applied to cross-species phenotypic studies to clarify previously unknown phenotypic connections in other species. Using the same principle to diseases can identify genetic associations and even help to identify disease associations that are not obvious. Therefore, as a supplement to HDO.db and DOSE, we developed mouse phenotypic ontology R package MPO.db.
Author: Erqiang Hu [aut, cre] 
Maintainer: Erqiang Hu <13766876214 at 163.com>
citation("MPO.db")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MPO.db")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MPO.db")| MPO_vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationData, AnnotationHub, FunctionalAnnotation |
| Version | 0.99.7 |
| License | Artistic-2.0 |
| Depends | R (>= 4.3.0) |
| Imports | AnnotationDbi, AnnotationHub, BiocFileCache, DBI, methods, utils |
| System Requirements | |
| URL | https://github.com/YuLab-SMU/MPO.db |
| Bug Reports | https://github.com/YuLab-SMU/MPO.db/issues |
See More
| Suggests | rmarkdown, knitr, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | DOSE |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MPO.db_0.99.7.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/MPO.db/ |
| Package Downloads Report | Download Stats |