BioMartGOGeneSets

This is the development version of BioMartGOGeneSets; for the stable release version, see BioMartGOGeneSets.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

Gene Ontology Gene Sets from BioMart

Bioconductor version: Development (3.24)

It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package.

Author: Zuguang Gu [aut, cre] ORCID: 0000-0002-7395-8709

Maintainer: Zuguang Gu <guzuguang at suat-sz.edu.cn>

Citation (from within R, enter citation("BioMartGOGeneSets")):

Zuguang Gu. BioMartGOGeneSets: Gene Ontology Gene Sets from BioMart. doi:10.18129/B9.bioc.BioMartGOGeneSets, R package version 0.99.12, https://bioconductor.org/packages/BioMartGOGeneSets.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("BioMartGOGeneSets")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioMartGOGeneSets")

Retrieve GO Gene Sets from BioMart	HTML	R Script
Pre-compiled GO Gene Sets	HTML	R Script
BioMart Gene Ontology Gene Sets Collections	HTML	R Script
Versions	HTML
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData, Organism
Version	0.99.12
In Bioconductor since	BioC 3.17 (R-4.3) (3.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.0.0)
Imports	utils, S4Vectors, GenomicRanges
System Requirements
URL	https://github.com/jokergoo/BioMartGOGeneSets

Suggests	biomaRt, GO.db, GenomeInfoDb, knitr, testthat, GetoptLong, DT
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioMartGOGeneSets_0.99.12.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Package Short Url	https://bioconductor.org/packages/BioMartGOGeneSets/
Package Downloads Report	Download Stats