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xenLite

This is the development version of xenLite; for the stable release version, see xenLite.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20

Simple classes and methods for managing Xenium datasets

DOI: 10.18129/B9.bioc.xenLite

Bioconductor version: Development (3.24)

Define a relatively light class for managing Xenium data using Bioconductor. Address use of parquet for coordinates, SpatialExperiment for assay and sample data. Address serialization and use of cloud storage.

Author: Vincent Carey [aut, cre] ORCID: 0000-0003-4046-0063

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("xenLite")):

Vincent Carey. xenLite: Simple classes and methods for managing Xenium datasets. doi:10.18129/B9.bioc.xenLite, R package version 1.7.0, https://bioconductor.org/packages/xenLite.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("xenLite")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("xenLite")

Details

Package Archives

Follow Installation instructions to use this package in your R session.