viper

DOI: 10.18129/B9.bioc.viper    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of viper; to use it, please install the devel version of Bioconductor.

Virtual Inference of Protein-activity by Enriched Regulon analysis

Bioconductor version: Development (3.10)

Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("viper")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("viper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("viper")

 

PDF R Script Using VIPER
PDF   Reference Manual
Text   LICENSE

Details

biocViews FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version 1.19.1
In Bioconductor since BioC 2.14 (R-3.1) (5 years)
License file LICENSE
Depends R (>= 2.14.0), Biobase, methods
Imports mixtools, stats, parallel, e1071, KernSmooth
LinkingTo
Suggests bcellViper
SystemRequirements
Enhances
URL
Depends On Me aracne.networks, vulcan
Imports Me diggit, diggitdata, RTN
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package viper_1.19.1.tar.gz
Windows Binary viper_1.19.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) viper_1.19.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/viper
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/viper
Package Short Url http://bioconductor.org/packages/viper/
Package Downloads Report Download Stats

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