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transformGamPoi

This is the development version of transformGamPoi; for the stable release version, see transformGamPoi.

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3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14

Variance Stabilizing Transformation for Gamma-Poisson Models

DOI: 10.18129/B9.bioc.transformGamPoi

Bioconductor version: Development (3.24)

Variance-stabilizing transformations help with the analysis of heteroskedastic data (i.e., data where the variance is not constant, like count data). This package provide two types of variance stabilizing transformations: (1) methods based on the delta method (e.g., 'acosh', 'log(x+1)'), (2) model residual based (Pearson and randomized quantile residuals).

Author: Constantin Ahlmann-Eltze [aut, cre] ORCID: 0000-0002-3762-068X

Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>

Citation (from within R, enter citation("transformGamPoi")):

Constantin Ahlmann-Eltze. transformGamPoi: Variance Stabilizing Transformation for Gamma-Poisson Models. doi:10.18129/B9.bioc.transformGamPoi, R package version 1.19.0, https://bioconductor.org/packages/transformGamPoi.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("transformGamPoi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("transformGamPoi")

Details

Package Archives

Follow Installation instructions to use this package in your R session.