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switchBox

This is the development version of switchBox; for the stable release version, see switchBox.

Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm


Bioconductor version: Development (3.19)

The package offer different classifiers based on comparisons of pair of features (TSP), using various decision rules (e.g., majority wins principle).

Author: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Maintainer: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Citation (from within R, enter citation("switchBox")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("switchBox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchBox")
Working with the switchBox package PDF R Script
Reference Manual PDF

Details

biocViews Classification, Software, StatisticalMethod
Version 1.39.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-2
Depends R (>= 2.13.1), pROC, gplots
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me PDATK
Suggests Me multiclassPairs
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package switchBox_1.39.0.tar.gz
Windows Binary switchBox_1.39.0.zip (64-bit only)
macOS Binary (x86_64) switchBox_1.39.0.tgz
macOS Binary (arm64) switchBox_1.39.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/switchBox
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/switchBox
Bioc Package Browser https://code.bioconductor.org/browse/switchBox/
Package Short Url https://bioconductor.org/packages/switchBox/
Package Downloads Report Download Stats