switchBox

This is the released version of switchBox; for the devel version, see switchBox.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm

Bioconductor version: Release (3.23)

The package offer different classifiers based on comparisons of pair of features (TSP), using various decision rules (e.g., majority wins principle).

Author: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Maintainer: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Citation (from within R, enter citation("switchBox")):

Bahman Afsari, Luigi Marchionni, Wikum Dinalankara. switchBox: Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm. doi:10.18129/B9.bioc.switchBox, R package version 1.48.0, https://bioconductor.org/packages/switchBox.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("switchBox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchBox")

Working with the switchBox package	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Classification, Software, StatisticalMethod
Version	1.48.0
In Bioconductor since	BioC 3.0 (R-3.1) (12 years)
License	GPL-2
Depends	R (>= 2.13.1), pROC, gplots
Imports
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me	PDATK
Suggests Me	multiclassPairs
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	switchBox_1.48.0.tar.gz
Windows Binary (x86_64)	switchBox_1.48.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	switchBox_1.48.0.tgz
macOS Binary (sonoma-arm64)	switchBox_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/switchBox
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/switchBox
Package Short Url	https://bioconductor.org/packages/switchBox/
Package Downloads Report	Download Stats