statTarget

DOI: 10.18129/B9.bioc.statTarget    

This is the development version of statTarget; to use it, please install the devel version of Bioconductor.

Statistical Analysis of Molecular Profiles

Bioconductor version: Development (3.10)

A streamlined tool provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics.

Author: Hemi Luan

Maintainer: Hemi Luan <hemi.luan at gmail.com>

Citation (from within R, enter citation("statTarget")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("statTarget")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("statTarget")

 

HTML R Script QC_free approach with Combat method
HTML R Script statTarget2 for pathway analysis
HTML R Script statTarget2 On using the Graphical User Interface
PDF   Reference Manual
Text   NEWS

Details

biocViews BatchEffect, ComBat, DifferentialExpression, GUI, ImmunoOncology, Lipidomics, Machine Learning, MassSpectrometry, Metabolomics, MultipleComparison, Normalization, Preprocessing, Proteomics, QC-RFSC, QC-RLSC, QualityControl, Software, Visualization
Version 1.15.3
In Bioconductor since BioC 3.4 (R-3.3) (3 years)
License LGPL (>= 3)
Depends R (>= 3.6.0)
Imports randomForest, plyr, pdist, ROC, utils, grDevices, graphics, rrcov, stats, pls, impute
LinkingTo
Suggests testthat, BiocStyle, knitr, rmarkdown, gWidgets2, gWidgets2RGtk2, RGtk2
SystemRequirements
Enhances
URL https://stattarget.github.io
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package statTarget_1.15.3.tar.gz
Windows Binary statTarget_1.15.3.zip
Mac OS X 10.11 (El Capitan) statTarget_1.15.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/statTarget
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/statTarget
Package Short Url http://bioconductor.org/packages/statTarget/
Package Downloads Report Download Stats

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