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spkTools

This is the development version of spkTools; for the stable release version, see spkTools.

Methods for Spike-in Arrays


Bioconductor version: Development (3.19)

The package contains functions that can be used to compare expression measures on different array platforms.

Author: Matthew N McCall <mccallm at gmail.com>, Rafael A Irizarry <rafa at jhu.edu>

Maintainer: Matthew N McCall <mccallm at gmail.com>

Citation (from within R, enter citation("spkTools")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("spkTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spkTools")
spkTools: Spike-in Data Analysis and Visualization PDF R Script
Reference Manual PDF

Details

biocViews Microarray, Software, Technology
Version 1.59.0
In Bioconductor since BioC 2.4 (R-2.9) (15 years)
License GPL (>= 2)
Depends R (>= 2.7.0), Biobase(>= 2.5.5)
Imports Biobase(>= 2.5.5), graphics, grDevices, gtools, methods, RColorBrewer, stats, utils
System Requirements
URL http://bioconductor.org
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package spkTools_1.59.0.tar.gz
Windows Binary spkTools_1.59.0.zip
macOS Binary (x86_64) spkTools_1.59.0.tgz
macOS Binary (arm64) spkTools_1.59.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/spkTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/spkTools
Bioc Package Browser https://code.bioconductor.org/browse/spkTools/
Package Short Url https://bioconductor.org/packages/spkTools/
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