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spkTools

This is the development version of spkTools; for the stable release version, see spkTools.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Methods for Spike-in Arrays


Bioconductor version: Development (3.24)

The package contains functions that can be used to compare expression measures on different array platforms.

Author: Matthew N McCall <mccallm at gmail.com>, Rafael A Irizarry <rafa at jhu.edu>

Maintainer: Matthew N McCall <mccallm at gmail.com>

Citation (from within R, enter citation("spkTools")):

Matthew N McCall, Rafael A Irizarry. spkTools: Methods for Spike-in Arrays. doi:10.18129/B9.bioc.spkTools, R package version 1.69.0, https://bioconductor.org/packages/spkTools.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("spkTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spkTools")
spkTools: Spike-in Data Analysis and Visualization PDF R Script
Reference ManualPDF

Details

biocViews Microarray, Software, Technology
Version1.69.0
In Bioconductor sinceBioC 2.4 (R-2.9) (17.5 years)
License GPL (>= 2)
Depends R (>= 2.7.0), Biobase (>= 2.5.5)
Imports Biobase (>= 2.5.5), graphics, grDevices, gtools, methods, RColorBrewer, stats, utils
System Requirements
URLhttp://bioconductor.org
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package spkTools_1.69.0.tar.gz
Windows Binary (x86_64) spkTools_1.69.0.zip
macOS Binary (big-sur-x86_64) spkTools_1.69.0.tgz
macOS Binary (sonoma-arm64) spkTools_1.69.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/spkTools
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/spkTools
Package Short Url https://bioconductor.org/packages/spkTools/
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