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rfaRm

This is the development version of rfaRm; for the stable release version, see rfaRm.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11

An R interface to the Rfam database

DOI: 10.18129/B9.bioc.rfaRm

Bioconductor version: Development (3.24)

rfaRm provides a client interface to the Rfam database of RNA families. Data that can be retrieved include RNA families, secondary structure images, covariance models, sequences within each family, alignments leading to the identification of a family and secondary structures in the dot-bracket format.

Author: Lara Selles Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro

Maintainer: Lara Selles Vidal <lara.selles at oist.jp>, Rafael Ayala <rafael.ayala at oist.jp>

Citation (from within R, enter citation("rfaRm")):

Lara Selles Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro. rfaRm: An R interface to the Rfam database. doi:10.18129/B9.bioc.rfaRm, R package version 1.25.2, https://bioconductor.org/packages/rfaRm.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("rfaRm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rfaRm")

Details

Package Archives

Follow Installation instructions to use this package in your R session.