qcmetrics

DOI: 10.18129/B9.bioc.qcmetrics    

This is the development version of qcmetrics; for the stable release version, see qcmetrics.

A Framework for Quality Control

Bioconductor version: Development (3.13)

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("qcmetrics")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("qcmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qcmetrics")

 

HTML R Script Index file for the qcmetrics package vignette
PDF   Reference Manual

Details

biocViews ImmunoOncology, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version 1.29.1
In Bioconductor since BioC 2.13 (R-3.0) (7.5 years)
License GPL-2
Depends R (>= 3.3)
Imports Biobase, methods, knitr, tools, xtable, pander, S4Vectors
LinkingTo
Suggests affy, MSnbase, ggplot2, lattice, mzR, BiocStyle
SystemRequirements
Enhances
URL http://lgatto.github.io/qcmetrics/articles/qcmetrics.html
BugReports https://github.com/lgatto/qcmetrics/issues
Depends On Me
Imports Me MSstatsQC
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qcmetrics_1.29.1.tar.gz
Windows Binary qcmetrics_1.29.1.zip (32- & 64-bit)
macOS 10.13 (High Sierra) qcmetrics_1.29.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/qcmetrics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qcmetrics
Package Short Url https://bioconductor.org/packages/qcmetrics/
Package Downloads Report Download Stats

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