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This is the development version of MSstatsQC; for the stable release version, see MSstatsQC.

Longitudinal system suitability monitoring and quality control for proteomic experiments

Bioconductor version: Development (3.19)

MSstatsQC is an R package which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.

Author: Eralp Dogu [aut, cre], Sara Taheri [aut], Olga Vitek [aut]

Maintainer: Eralp Dogu <eralp.dogu at gmail.com>

Citation (from within R, enter citation("MSstatsQC")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

MSstatsQC HTML R Script
Reference Manual PDF


biocViews MassSpectrometry, Proteomics, QualityControl, Software
Version 2.21.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic License 2.0
Depends R (>= 3.5.0)
Imports dplyr, plotly, ggplot2, ggExtra, stats, grid, MSnbase, qcmetrics
System Requirements
URL http://msstats.org/msstatsqc
Bug Reports https://groups.google.com/forum/#!forum/msstatsqc
See More
Suggests knitr, rmarkdown, testthat, RforProteomics
Linking To
Depends On Me
Imports Me MSstatsQCgui
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsQC_2.21.0.tar.gz
Windows Binary MSstatsQC_2.21.0.zip
macOS Binary (x86_64) MSstatsQC_2.21.0.tgz
macOS Binary (arm64) MSstatsQC_2.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSstatsQC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsQC
Bioc Package Browser https://code.bioconductor.org/browse/MSstatsQC/
Package Short Url https://bioconductor.org/packages/MSstatsQC/
Package Downloads Report Download Stats