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pathRender

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of pathRender; for the stable release version, see pathRender.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Render molecular pathways


Bioconductor version: Development (3.24)

build graphs from pathway databases, render them by Rgraphviz.

Author: Li Long <lilong at isb-sib.ch>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("pathRender")):

Li Long. pathRender: Render molecular pathways. doi:10.18129/B9.bioc.pathRender, R package version 1.81.1, https://bioconductor.org/packages/pathRender.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("pathRender")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathRender")
pathRender overview PDF R Script
pathway graphs colored by expression map PDF R Script
Reference ManualPDF
NEWSText

Details

biocViews GraphAndNetwork, Pathways, Software, Visualization
Version1.81.1
In Bioconductor sinceBioC 1.8 (R-2.3) (20.5 years)
License LGPL
Depends graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods, stats4
Imports
System Requirements
URLhttp://www.bioconductor.org
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pathRender_1.81.1.tar.gz
Windows Binary (x86_64) pathRender_1.81.1.zip
macOS Binary (big-sur-x86_64) pathRender_1.81.1.tgz
macOS Binary (sonoma-arm64) pathRender_1.81.1.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/pathRender
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/pathRender
Package Short Url https://bioconductor.org/packages/pathRender/
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