nucleR
This is the development version of nucleR; for the stable release version, see nucleR.
Nucleosome positioning package for R
Bioconductor version: Development (3.20)
Nucleosome positioning for Tiling Arrays and NGS experiments.
Author: Oscar Flores, Ricard Illa
Maintainer: Alba Sala <alba.sala at irbbarcelona.org>
Citation (from within R, enter
citation("nucleR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("nucleR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nucleR")
Vignette Title | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ChIPSeq, Coverage, DataImport, Genetics, Microarray, NucleosomePositioning, QualityControl, Sequencing, Software |
Version | 2.37.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (13 years) |
License | LGPL (>= 3) |
Depends | R (>= 3.5.0), methods |
Imports | Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rsamtools, S4Vectors, ShortRead, dplyr, ggplot2, magrittr, parallel, stats, utils, grDevices |
System Requirements | |
URL |
See More
Suggests | BiocStyle, knitr, rmarkdown, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | nucleR_2.37.0.tar.gz |
Windows Binary | nucleR_2.37.0.zip |
macOS Binary (x86_64) | nucleR_2.37.0.tgz |
macOS Binary (arm64) | nucleR_2.37.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/nucleR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/nucleR |
Bioc Package Browser | https://code.bioconductor.org/browse/nucleR/ |
Package Short Url | https://bioconductor.org/packages/nucleR/ |
Package Downloads Report | Download Stats |