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nucleR

This is the development version of nucleR; for the stable release version, see nucleR.

Nucleosome positioning package for R


Bioconductor version: Development (3.19)

Nucleosome positioning for Tiling Arrays and NGS experiments.

Author: Oscar Flores, Ricard Illa

Maintainer: Alba Sala <alba.sala at irbbarcelona.org>

Citation (from within R, enter citation("nucleR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("nucleR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nucleR")
Vignette Title HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeq, Coverage, DataImport, Genetics, Microarray, NucleosomePositioning, QualityControl, Sequencing, Software
Version 2.35.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License LGPL (>= 3)
Depends R (>= 3.5.0), methods
Imports Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rsamtools, S4Vectors, ShortRead, dplyr, ggplot2, magrittr, parallel, stats, utils, grDevices
System Requirements
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Suggests BiocStyle, knitr, rmarkdown, testthat
Linking To
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nucleR_2.35.0.tar.gz
Windows Binary nucleR_2.35.0.zip
macOS Binary (x86_64) nucleR_2.35.0.tgz
macOS Binary (arm64) nucleR_2.35.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/nucleR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nucleR
Bioc Package Browser https://code.bioconductor.org/browse/nucleR/
Package Short Url https://bioconductor.org/packages/nucleR/
Package Downloads Report Download Stats