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methylMnM

This is the development version of methylMnM; for the stable release version, see methylMnM.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

detect different methylation level (DMR)


Bioconductor version: Development (3.24)

To give the exactly p-value and q-value of MeDIP-seq and MRE-seq data for different samples comparation.

Author: Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang

Maintainer: Yan Zhou<zhouy1016 at 163.com>

Citation (from within R, enter citation("methylMnM")):

Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang. methylMnM: detect different methylation level (DMR). doi:10.18129/B9.bioc.methylMnM, R package version 1.51.0, https://bioconductor.org/packages/methylMnM.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("methylMnM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylMnM")
methylMnM PDF R Script
Reference ManualPDF

Details

biocViews DNAMethylation, Sequencing, Software
Version1.51.0
In Bioconductor sinceBioC 2.13 (R-3.0) (13 years)
License GPL-3
Depends R (>= 2.12.1), edgeR, statmod
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methylMnM_1.51.0.tar.gz
Windows Binary (x86_64) methylMnM_1.51.0.zip (64-bit only)
macOS Binary (big-sur-x86_64) methylMnM_1.51.0.tgz
macOS Binary (sonoma-arm64) methylMnM_1.51.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/methylMnM
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/methylMnM
Package Short Url https://bioconductor.org/packages/methylMnM/
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