• Home
• Bioconductor 3.24
• Software Packages
• lpNet (development version)

lpNet

This is the development version of lpNet; for the stable release version, see lpNet.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12

Linear Programming Model for Network Inference

DOI: 10.18129/B9.bioc.lpNet

Bioconductor version: Development (3.24)

lpNet aims at infering biological networks, in particular signaling and gene networks. For that it takes perturbation data, either steady-state or time-series, as input and generates an LP model which allows the inference of signaling networks. For parameter identification either leave-one-out cross-validation or stratified n-fold cross-validation can be used.

Author: Bettina Knapp, Marta R. A. Matos, Johanna Mazur, Lars Kaderali

Maintainer: Lars Kaderali <lars.kaderali at uni-greifswald.de>

Citation (from within R, enter citation("lpNet")):

Bettina Knapp, Marta R. A. Matos, Johanna Mazur, Lars Kaderali. lpNet: Linear Programming Model for Network Inference. doi:10.18129/B9.bioc.lpNet, R package version 2.45.0, https://bioconductor.org/packages/lpNet.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("lpNet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("lpNet")

Details

Package Archives

Follow Installation instructions to use this package in your R session.