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ipdDb

This is the development version of ipdDb; for the stable release version, see ipdDb.

IPD IMGT/HLA and IPD KIR database for Homo sapiens


Bioconductor version: Development (3.19)

All alleles from the IPD IMGT/HLA and IPD KIR database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.

Author: Steffen Klasberg

Maintainer: Steffen Klasberg <klasberg at dkms-lab.de>

Citation (from within R, enter citation("ipdDb")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ipdDb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ipdDb")
ipdDb HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AnnotationHubSoftware, DataRepresentation, GenomicVariation, SequenceMatching, Software, VariantAnnotation
Version 1.21.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), methods, AnnotationDbi(>= 1.43.1), AnnotationHub
Imports Biostrings, GenomicRanges, RSQLite, DBI, IRanges, stats, assertthat
System Requirements
URL https://github.com/DKMS-LSL/ipdDb
Bug Reports https://github.com/DKMS-LSL/ipdDb/issues/new
See More
Suggests knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ipdDb_1.21.0.tar.gz
Windows Binary ipdDb_1.21.0.zip
macOS Binary (x86_64) ipdDb_1.21.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ipdDb
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ipdDb
Bioc Package Browser https://code.bioconductor.org/browse/ipdDb/
Package Short Url https://bioconductor.org/packages/ipdDb/
Package Downloads Report Download Stats