ipdDb
IPD IMGT/HLA and IPD KIR database for Homo sapiens
Bioconductor version: 3.23 · Package version: 1.30.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
All alleles from the IPD IMGT/HLA <https://www.ebi.ac.uk/ipd/imgt/hla/> and IPD KIR <https://www.ebi.ac.uk/ipd/kir/> database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ipdDb")Details
| Maintainer | Steffen Klasberg <klasberg@dkms-lab.de> |
| Author | Steffen Klasberg |
| License | Artistic-2.0 |
| URL | https://github.com/DKMS-LSL/ipdDb |
| Bug Reports | https://github.com/DKMS-LSL/ipdDb/issues/new |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | AnnotationHubSoftware, DataRepresentation, GenomicVariation, SequenceMatching, Software, VariantAnnotation |
| Package Short Url | https://bioconductor.org/packages/ipdDb/ |
Citation
From within R, enter citation("ipdDb"):
Steffen Klasberg. ipdDb: IPD IMGT/HLA and IPD KIR database for Homo sapiens. doi:10.18129/B9.bioc.ipdDb, R package version 1.30.0, https://bioconductor.org/packages/ipdDb.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ipdDb_1.30.0.tar.gz |
| Windows binary (x86_64) | ipdDb_1.30.0.zip |
| macOS binary (arm64) | ipdDb_1.30.0.tgz |
| macOS binary (x86_64) | ipdDb_1.30.0.tgz |
Dependencies
Depends: R (>= 3.5.0), methods, AnnotationDbi (>= 1.43.1), AnnotationHub
Imports: Biostrings, GenomicRanges, RSQLite, DBI, IRanges, stats, assertthat