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hmdbQuery

This is the development version of hmdbQuery; for the stable release version, see hmdbQuery.

utilities for exploration of human metabolome database


Bioconductor version: Development (3.19)

Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("hmdbQuery")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("hmdbQuery")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hmdbQuery")
hmdbQuery: working with Human Metabolome Database (hmdb.ca) HTML R Script
Reference Manual PDF

Details

biocViews Infrastructure, Metabolomics, Software
Version 1.23.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5), XML
Imports S4Vectors, methods, utils
System Requirements
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Suggests knitr, annotate, gwascat, testthat, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package hmdbQuery_1.23.0.tar.gz
Windows Binary hmdbQuery_1.23.0.zip (64-bit only)
macOS Binary (x86_64) hmdbQuery_1.23.0.tgz
macOS Binary (arm64) hmdbQuery_1.23.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/hmdbQuery
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hmdbQuery
Bioc Package Browser https://code.bioconductor.org/browse/hmdbQuery/
Package Short Url https://bioconductor.org/packages/hmdbQuery/
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