gwascat
This is the development version of gwascat; for the stable release version, see gwascat.
representing and modeling data in the EMBL-EBI GWAS catalog
Bioconductor version: Development (3.20)
Represent and model data in the EMBL-EBI GWAS catalog.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("gwascat")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("gwascat")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gwascat")
gwascat -- GRanges for GWAS hits in EBI catalog | HTML | R Script |
gwascat: structuring and querying the NHGRI GWAS catalog | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Genetics, Software |
Version | 2.37.0 |
In Bioconductor since | BioC 2.10 (R-2.15) (12.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0), methods |
Imports | S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges(>= 1.29.6), GenomicFeatures, readr, Biostrings, AnnotationDbi, BiocFileCache, snpStats, VariantAnnotation, AnnotationHub |
System Requirements | |
URL |
See More
Suggests | DO.db, DT, knitr, RBGL, testthat, rmarkdown, dplyr, Gviz, Rsamtools, rtracklayer, graph, ggbio, DelayedArray, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, BiocStyle |
Linking To | |
Enhances | SNPlocs.Hsapiens.dbSNP144.GRCh37 |
Depends On Me | vtpnet, liftOver |
Imports Me | circRNAprofiler |
Suggests Me | GenomicScores, hmdbQuery, ldblock, parglms, TFutils, grasp2db |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | gwascat_2.37.0.tar.gz |
Windows Binary | gwascat_2.37.0.zip |
macOS Binary (x86_64) | gwascat_2.37.0.tgz |
macOS Binary (arm64) | gwascat_2.37.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/gwascat |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gwascat |
Bioc Package Browser | https://code.bioconductor.org/browse/gwascat/ |
Package Short Url | https://bioconductor.org/packages/gwascat/ |
Package Downloads Report | Download Stats |