globalSeq
This is the development version of globalSeq; for the stable release version, see globalSeq.
Global Test for Counts
Bioconductor version: Development (3.20)
The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size. Useful for testing for association between RNA-Seq and high-dimensional data.
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger at uni.lu>
citation("globalSeq")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("globalSeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("globalSeq")
article frame | HTML | |
vignette frame | HTML | |
vignette source | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DifferentialExpression, DimensionReduction, ExomeSeq, ExonArray, GeneExpression, GenomeWideAssociation, MultipleComparison, RNASeq, Regression, Sequencing, Software, Transcriptomics, WholeGenome, miRNA |
Version | 1.33.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
License | GPL-3 |
Depends | R (>= 3.0.0) |
Imports | |
System Requirements | |
URL | https://github.com/rauschenberger/globalSeq |
Bug Reports | https://github.com/rauschenberger/globalSeq/issues |
See More
Suggests | knitr, testthat, SummarizedExperiment, S4Vectors |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | globalSeq_1.33.0.tar.gz |
Windows Binary (x86_64) | globalSeq_1.33.0.zip |
macOS Binary (x86_64) | globalSeq_1.33.0.tgz |
macOS Binary (arm64) | globalSeq_1.33.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/globalSeq |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/globalSeq |
Bioc Package Browser | https://code.bioconductor.org/browse/globalSeq/ |
Package Short Url | https://bioconductor.org/packages/globalSeq/ |
Package Downloads Report | Download Stats |