DOI: 10.18129/B9.bioc.ensemblVEP    

This is the development version of ensemblVEP; for the stable release version, see ensemblVEP.

R Interface to Ensembl Variant Effect Predictor

Bioconductor version: Development (3.9)

Query the Ensembl Variant Effect Predictor via the perl API.

Author: Valerie Obenchain and Lori Shepherd

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("ensemblVEP")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("ensemblVEP", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script ensemblVEP
PDF R Script PreV90EnsemblVEP
PDF   Reference Manual
Text   NEWS


biocViews Annotation, SNP, Software, VariantAnnotation
Version 1.25.2
In Bioconductor since BioC 2.12 (R-3.0) (6 years)
License Artistic-2.0
Depends methods, BiocGenerics, GenomicRanges, VariantAnnotation
Imports S4Vectors(>= 0.9.25), Biostrings, SummarizedExperiment, GenomeInfoDb, stats
Suggests RUnit
SystemRequirements Ensembl VEP (API version 96) and the Perl modules DBI and DBD::mysql must be installed. See the package README and Ensembl installation instructions: http://www.ensembl.org/info/docs/tools/vep/script/vep_download.html#installer
Depends On Me
Imports Me TVTB
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package ensemblVEP_1.25.2.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) ensemblVEP_1.25.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/ensemblVEP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ensemblVEP
Package Short Url http://bioconductor.org/packages/ensemblVEP/
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