diggit

This is the development version of diggit; for the stable release version, see diggit.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

Inference of Genetic Variants Driving Cellular Phenotypes

Bioconductor version: Development (3.24)

Inference of Genetic Variants Driving Cellullar Phenotypes by the DIGGIT algorithm

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("diggit")):

Mariano J Alvarez. diggit: Inference of Genetic Variants Driving Cellular Phenotypes. doi:10.18129/B9.bioc.diggit, R package version 1.45.0, https://bioconductor.org/packages/diggit.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("diggit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diggit")

Using DIGGIT	PDF	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version	1.45.0
In Bioconductor since	BioC 3.1 (R-3.2) (11.5 years)
License	file LICENSE
Depends	R (>= 3.0.2), Biobase, methods
Imports	ks, viper (>= 1.3.1), parallel
System Requirements
URL

Suggests	diggitdata
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	diggit_1.45.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)	diggit_1.45.0.tgz
macOS Binary (sonoma-arm64)	diggit_1.45.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/diggit
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/diggit
Package Short Url	https://bioconductor.org/packages/diggit/
Package Downloads Report	Download Stats