conumee
This is the development version of conumee; for the stable release version, see conumee.
All Bioconductor versions of conumee
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1
Enhanced copy-number variation analysis using Illumina DNA methylation arrays
Bioconductor version: 3.24 · Package version: 1.47.1
This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.
Author: Volker Hovestadt, Marc Zapatka
Maintainer: Volker Hovestadt <conumee at hovestadt.bio>
Citation
From within R, enter citation("conumee"):
Volker Hovestadt, Marc Zapatka. conumee: Enhanced copy-number variation analysis using Illumina DNA methylation arrays. doi:10.18129/B9.bioc.conumee, R package version 1.47.1, https://bioconductor.org/packages/conumee.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("conumee")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.47.1 |
| License | GPL (>= 2) |
| Last updated | 2026-05-29 |
| In Bioconductor since | BioC 3.1 (R-3.2) (11 years) |
| Downloads rank | 682 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | CopyNumberVariation, DNAMethylation, MethylationArray, Microarray, Normalization, Preprocessing, QualityControl, Software |
| Package Short Url | https://bioconductor.org/packages/conumee/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("conumee")| The conumee vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | conumee_1.47.1.tar.gz |
| macOS binary (arm64) | conumee_1.47.1.tgz |
| macOS binary (x86_64) | conumee_1.47.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/conumee |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/conumee |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5.0), minfi, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylationEPICmanifest
Imports: methods, stats, DNAcopy, rtracklayer, GenomicRanges, IRanges, Seqinfo
Reverse dependencies
Suggests Me (1): CopyNeutralIMA