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cmapR

This is the development version of cmapR; for the stable release version, see cmapR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11

CMap Tools in R

DOI: 10.18129/B9.bioc.cmapR

Bioconductor version: Development (3.24)

The Connectivity Map (CMap) is a massive resource of perturbational gene expression profiles built by researchers at the Broad Institute and funded by the NIH Library of Integrated Network-Based Cellular Signatures (LINCS) program. Please visit https://clue.io for more information. The cmapR package implements methods to parse, manipulate, and write common CMap data objects, such as annotated matrices and collections of gene sets.

Author: Ted Natoli [aut, cre] ORCID: 0000-0002-0953-0206

Maintainer: Ted Natoli <ted.e.natoli at gmail.com>

Citation (from within R, enter citation("cmapR")):

Ted Natoli. cmapR: CMap Tools in R. doi:10.18129/B9.bioc.cmapR, R package version 1.25.0, https://bioconductor.org/packages/cmapR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("cmapR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cmapR")

Details

Package Archives

Follow Installation instructions to use this package in your R session.