clusterSeq
This is the development version of clusterSeq; for the stable release version, see clusterSeq.
All Bioconductor versions of clusterSeq
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5
Clustering of high-throughput sequencing data by identifying co-expression patterns
Bioconductor version: 3.24 · Package version: 1.37.0
Identification of clusters of co-expressed genes based on their expression across multiple (replicated) biological samples.
Author: Thomas J. Hardcastle [aut], Irene Papatheodorou [aut], Samuel Granjeaud [cre] 
Maintainer: Samuel Granjeaud <samuel.granjeaud at inserm.fr>
Citation
From within R, enter citation("clusterSeq"):
Thomas J. Hardcastle, Irene Papatheodorou. clusterSeq: Clustering of high-throughput sequencing data by identifying co-expression patterns. doi:10.18129/B9.bioc.clusterSeq, R package version 1.37.0, https://bioconductor.org/packages/clusterSeq.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("clusterSeq")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.37.0 |
| License | GPL-3 |
| URL | https://github.com/samgg/clusterSeq |
| Bug Reports | https://github.com/samgg/clusterSeq/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.5 (R-3.4) (9 years) |
| Downloads rank | 1302 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Clustering, DifferentialExpression, GeneExpression, MultipleComparison, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/clusterSeq/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("clusterSeq")| Advanced baySeq analyses | R Script | |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | clusterSeq_1.37.0.tar.gz |
| Windows binary (x86_64) | clusterSeq_1.37.0.zip |
| macOS binary (arm64) | clusterSeq_1.37.0.tgz |
| macOS binary (x86_64) | clusterSeq_1.37.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/clusterSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/clusterSeq |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.0.0), methods, BiocParallel, baySeq, graphics, stats, utils
Imports: BiocGenerics
Suggests: BiocStyle