To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterExperiment")

In most cases, you don't need to download the package archive at all.

clusterExperiment

 

This is the development version of clusterExperiment; for the stable release version, see clusterExperiment.

Compare Clusterings for Single-Cell Sequencing

Bioconductor version: Development (3.6)

Provides functionality for running and comparing many different clusterings of single-cell sequencing data or other large mRNA Expression data sets.

Author: Elizabeth Purdom [aut, cre, cph], Davide Risso [aut], Marla Johnson [ctb]

Maintainer: Elizabeth Purdom <epurdom at stat.berkeley.edu>

Citation (from within R, enter citation("clusterExperiment")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterExperiment")

Documentation

HTML R Script clusterExperiment Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, RNASeq, Sequencing, SingleCell, Software
Version 1.3.2
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License Artistic-2.0
Depends R (>= 3.3), SummarizedExperiment
Imports methods, NMF, RColorBrewer, ape, phylobase, cluster, stats, limma, dendextend, howmany, locfdr, matrixStats, graphics, parallel, RSpectra, kernlab
LinkingTo
Suggests BiocStyle, knitr, diagram, testthat, scRNAseq, MAST
SystemRequirements
Enhances
URL
BugReports https://github.com/epurdom/clusterExperiment/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source clusterExperiment_1.3.2.tar.gz
Windows Binary clusterExperiment_1.3.1.zip
Mac OS X 10.11 (El Capitan) clusterExperiment_1.3.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/clusterExperiment
Package Short Url http://bioconductor.org/packages/clusterExperiment/
Package Downloads Report Download Stats

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