chevreulProcess

This is the development version of chevreulProcess; to use it, please install the devel version of Bioconductor.

Tools for managing SingleCellExperiment objects as projects


Bioconductor version: Development (3.21)

Tools analyzing SingleCellExperiment objects as projects. for input into the Chevreul app downstream. Includes functions for analysis of single cell RNA sequencing data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.

Author: Kevin Stachelek [aut, cre] (ORCID: ), Bhavana Bhat [aut]

Maintainer: Kevin Stachelek <kevin.stachelek at gmail.com>

Citation (from within R, enter citation("chevreulProcess")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("chevreulProcess")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Coverage, DataImport, DimensionReduction, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcription, Transcriptomics, Visualization
Version 0.99.25
In Bioconductor since BioC 3.21 (R-4.5)
License MIT + file LICENSE
Depends R (>= 4.5.0), SingleCellExperiment, scater
Imports batchelor, bluster, circlize, cluster, DBI, dplyr, EnsDb.Hsapiens.v86, ensembldb, fs, GenomicFeatures, glue, megadepth, methods, purrr, RSQLite, S4Vectors, scran, scuttle, stringr, tibble, tidyr, tidyselect, utils
System Requirements
URL https://github.com/whtns/chevreulProcess https://whtns.github.io/chevreulProcess/
Bug Reports https://github.com/cobriniklab/chevreulProcess/issues
See More
Suggests BiocStyle, chevreuldata, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/chevreulProcess
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/chevreulProcess
Package Short Url https://bioconductor.org/packages/chevreulProcess/
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