chevreulProcess
This is the released version of chevreulProcess; for the devel version, see chevreulProcess.
Tools for managing SingleCellExperiment objects as projects
Bioconductor version: Release (3.23)
Tools for analyzing SingleCellExperiment objects as projects. for input into the chevreulShiny app downstream. Includes functions for analysis of single cell RNA sequencing data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
Author: Kevin Stachelek [aut, cre] 
, Bhavana Bhat [aut]
Maintainer: Kevin Stachelek <kevin.stachelek at gmail.com>
citation("chevreulProcess")):Kevin Stachelek, Bhavana Bhat. chevreulProcess: Tools for managing SingleCellExperiment objects as projects. doi:10.18129/B9.bioc.chevreulProcess, R package version 1.4.0, https://bioconductor.org/packages/chevreulProcess.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("chevreulProcess")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chevreulProcess")| Preprocessing | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Coverage, DataImport, DimensionReduction, GeneExpression, Normalization, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcription, Transcriptomics, Visualization |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.21 (R-4.5) (1.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0), SingleCellExperiment, scater |
| Imports | batchelor, bluster, circlize, cluster, DBI, dplyr, EnsDb.Hsapiens.v86, ensembldb, fs, GenomicFeatures, glue, megadepth, methods, purrr, RSQLite, S4Vectors, scran, scuttle, stringr, tibble, tidyr, tidyselect, utils |
| System Requirements | |
| URL | https://github.com/whtns/chevreulProcess https://whtns.github.io/chevreulProcess/ |
| Bug Reports | https://github.com/cobriniklab/chevreulProcess/issues |
See More
| Suggests | BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | chevreulPlot, chevreulShiny |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | chevreulProcess_1.4.0.tar.gz |
| Windows Binary (x86_64) | chevreulProcess_1.4.0.zip |
| macOS Binary (big-sur-x86_64) | chevreulProcess_1.4.0.tgz |
| macOS Binary (sonoma-arm64) | chevreulProcess_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/chevreulProcess |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chevreulProcess |
| Package Short Url | https://bioconductor.org/packages/chevreulProcess/ |
| Package Downloads Report | Download Stats |