cellmigRation
This is the development version of cellmigRation; for the stable release version, see cellmigRation.
All Bioconductor versions of cellmigRation
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics
Bioconductor version: 3.24 · Package version: 1.21.0
Import TIFF images of fluorescently labeled cells, and track cell movements over time. Parallelization is supported for image processing and for fast computation of cell trajectories. In-depth analysis of cell trajectories is enabled by 15 trajectory analysis functions.
Author: Salim Ghannoum [aut, cph], Damiano Fantini [aut, cph], Waldir Leoncio [cre, aut], Øystein Sørensen [aut]
Maintainer: Waldir Leoncio <w.l.netto at medisin.uio.no>
Citation
From within R, enter citation("cellmigRation"):
Salim Ghannoum, Damiano Fantini, Waldir Leoncio, Øystein Sørensen. cellmigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics. doi:10.18129/B9.bioc.cellmigRation, R package version 1.21.0, https://bioconductor.org/packages/cellmigRation.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("cellmigRation")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.21.0 |
| License | GPL-2 |
| URL | https://github.com/ocbe-uio/cellmigRation/ |
| Bug Reports | https://github.com/ocbe-uio/cellmigRation/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.13 (R-4.1) (5 years) |
| Downloads rank | 1908 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | CellBiology, DataImport, DataRepresentation, Software |
| Package Short Url | https://bioconductor.org/packages/cellmigRation/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cellmigRation")| cellmigRation | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | cellmigRation_1.21.0.tar.gz |
| Windows binary (x86_64) | cellmigRation_1.21.0.zip |
| macOS binary (arm64) | cellmigRation_1.21.0.tgz |
| macOS binary (x86_64) | cellmigRation_1.21.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cellmigRation |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cellmigRation |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.1), methods, foreach
Imports: tiff, graphics, stats, utils, reshape2, parallel, doParallel, grDevices, matrixStats, FME, SpatialTools, sp, vioplot, FactoMineR, Hmisc
Suggests: knitr, rmarkdown, dplyr, ggplot2, RUnit, BiocGenerics, BiocManager, kableExtra, rgl