cellbaseR
This is the development version of cellbaseR; for the stable release version, see cellbaseR.
Querying annotation data from the high performance Cellbase web
Bioconductor version: Development (3.20)
This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.
Author: Mohammed OE Abdallah
Maintainer: Mohammed OE Abdallah <melsiddieg at gmail.com>
citation("cellbaseR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("cellbaseR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cellbaseR")
Simplifying Genomic Annotations in R | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, Software, VariantAnnotation |
Version | 1.29.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (7.5 years) |
License | Apache License (== 2.0) |
Depends | R (>= 3.4) |
Imports | methods, jsonlite, httr, data.table, pbapply, tidyr, R.utils, Rsamtools, BiocParallel, foreach, utils, parallel, doParallel |
System Requirements | |
URL | https://github.com/melsiddieg/cellbaseR |
See More
Suggests | BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | cellbaseR_1.29.0.tar.gz |
Windows Binary | cellbaseR_1.29.0.zip (64-bit only) |
macOS Binary (x86_64) | cellbaseR_1.29.0.tgz |
macOS Binary (arm64) | cellbaseR_1.29.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/cellbaseR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cellbaseR |
Bioc Package Browser | https://code.bioconductor.org/browse/cellbaseR/ |
Package Short Url | https://bioconductor.org/packages/cellbaseR/ |
Package Downloads Report | Download Stats |