To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cellbaseR")

In most cases, you don't need to download the package archive at all.

cellbaseR

 

   

Querying annotation data from the high performance Cellbase web services

Bioconductor version: Release (3.5)

This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.

Author: Mohammed OE Abdallah

Maintainer: Mohammed OE Abdallah <melsiddieg at gmail.com>

Citation (from within R, enter citation("cellbaseR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cellbaseR")

Documentation

HTML R Script Simplifying Genomic Annotations in R
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, Software, VariantAnnotation
Version 1.0.0
In Bioconductor since BioC 3.5 (R-3.4) (< 6 months)
License Apache License (== 2.0)
Depends R (>= 3.4)
Imports methods, jsonlite, httr, data.table, pbapply, tidyr, R.utils, Rsamtools, BiocParallel, foreach, utils, parallel, doParallel
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation
SystemRequirements
Enhances
URL https://github.com/melsiddieg/cellbaseR
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cellbaseR_1.0.0.tar.gz
Windows Binary cellbaseR_1.0.0.zip
Mac OS X 10.11 (El Capitan) cellbaseR_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/cellbaseR/tree/release-3.5
Package Short Url http://bioconductor.org/packages/cellbaseR/
Package Downloads Report Download Stats

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