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affycomp

This is the development version of affycomp; for the stable release version, see affycomp.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Graphics Toolbox for Assessment of Affymetrix Expression Measures


Bioconductor version: Development (3.24)

The package contains functions that can be used to compare expression measures for Affymetrix Oligonucleotide Arrays.

Author: Rafael A. Irizarry <rafa at ds.dfci.harvard.edu> and Zhijin Wu <zwu at stat.brown.edu> with contributions from Simon Cawley <simon_cawley at affymetrix.com>

Maintainer: Robert D. Shear <rshear at ds.dfci.harvard.edu>

Citation (from within R, enter citation("affycomp")):

Rafael A. Irizarry and Zhijin Wu with contributions from Simon Cawley. affycomp: Graphics Toolbox for Assessment of Affymetrix Expression Measures. doi:10.18129/B9.bioc.affycomp, R package version 1.89.0, https://bioconductor.org/packages/affycomp.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("affycomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affycomp")
affycomp primer PDF R Script
Reference ManualPDF

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version1.89.0
In Bioconductor sinceBioC 1.6 (R-2.1) or earlier (> 21.5 years)
License GPL (>= 2)
Depends R (>= 2.13.0), methods, Biobase (>= 2.3.3)
Imports
System Requirements
URLhttps://bioconductor.org/packages/affycomp
Bug Reportshttps://github.com/rafalab/affycomp/issues
See More
Suggests splines, affycompData
Linking To
Enhances
Depends On Me affycompData
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affycomp_1.89.0.tar.gz
Windows Binary (x86_64) affycomp_1.89.0.zip
macOS Binary (big-sur-x86_64) affycomp_1.89.0.tgz
macOS Binary (sonoma-arm64) affycomp_1.89.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/affycomp
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/affycomp
Package Short Url https://bioconductor.org/packages/affycomp/
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