DOI: 10.18129/B9.bioc.adductomicsR  

This is the development version of adductomicsR; for the stable release version, see adductomicsR.

Processing of adductomic mass spectral datasets

Bioconductor version: Development (3.19)

Processes MS2 data to identify potentially adducted peptides from spectra that has been corrected for mass drift and retention time drift and quantifies MS1 level mass spectral peaks.

Author: Josie Hayes <jlhayes1982 at>

Maintainer: Josie Hayes <jlhayes1982 at>

Citation (from within R, enter citation("adductomicsR")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Adductomics workflow
PDF   Reference Manual


biocViews DataImport, GUI, MassSpectrometry, Metabolomics, Software, ThirdPartyClient
Version 1.19.0
In Bioconductor since BioC 3.9 (R-3.6) (4.5 years)
License Artistic-2.0
Depends R (>= 3.6), adductData, ExperimentHub, AnnotationHub
Imports parallel (>= 3.3.2), data.table (>= 1.10.4), OrgMassSpecR (>= 0.4.6), foreach (>= 1.4.3), mzR(>= 2.14.0), ade4 (>= 1.7.6), rvest (>= 0.3.2), pastecs (>= 1.3.18), reshape2 (>= 1.4.2), pracma (>= 2.0.4), DT (>= 0.2), fpc (>= 2.1.10), doSNOW (>= 1.0.14), fastcluster (>= 1.1.22), RcppEigen (>=, bootstrap (>= 2017.2), smoother (>= 1.1), dplyr (>= 0.7.5), zoo (>= 1.8), stats (>= 3.5.0), utils (>= 3.5.0), graphics (>= 3.5.0), grDevices (>= 3.5.0), methods (>= 3.5.0), datasets (>= 3.5.0)
Suggests knitr (>= 1.15.1), rmarkdown (>= 1.5), Rdisop(>= 1.34.0), testthat
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package adductomicsR_1.19.0.tar.gz
Windows Binary
macOS Binary (x86_64) adductomicsR_1.19.0.tgz
macOS Binary (arm64)
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: