TurboNorm

DOI: 10.18129/B9.bioc.TurboNorm  

This is the development version of TurboNorm; for the stable release version, see TurboNorm.

A fast scatterplot smoother suitable for microarray normalization

Bioconductor version: Development (3.18)

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Author: Maarten van Iterson and Chantal van Leeuwen

Maintainer: Maarten van Iterson <mviterson at gmail.com>

Citation (from within R, enter citation("TurboNorm")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TurboNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews CpGIsland, DNAMethylation, MethylationArray, Microarray, Normalization, OneChannel, Preprocessing, Software, TwoChannel
Version 1.49.0
In Bioconductor since BioC 2.8 (R-2.13) (12 years)
License LGPL
Depends R (>= 2.12.0), convert, limma(>= 1.7.0), marray
Imports stats, grDevices, affy, lattice
LinkingTo
Suggests BiocStyle, affydata
SystemRequirements
Enhances
URL http://www.humgen.nl/MicroarrayAnalysisGroup.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary TurboNorm_1.49.0.zip (64-bit only)
macOS Binary (x86_64) TurboNorm_1.49.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TurboNorm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TurboNorm
Bioc Package Browser https://code.bioconductor.org/browse/TurboNorm/
Package Short Url https://bioconductor.org/packages/TurboNorm/
Package Downloads Report Download Stats

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