TurboNorm

DOI: 10.18129/B9.bioc.TurboNorm  

This is the development version of TurboNorm; for the stable release version, see TurboNorm.

A fast scatterplot smoother suitable for microarray normalization

Bioconductor version: Development (3.18)

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Author: Maarten van Iterson and Chantal van Leeuwen

Maintainer: Maarten van Iterson <mviterson at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TurboNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CpGIsland, DNAMethylation, MethylationArray, Microarray, Normalization, OneChannel, Preprocessing, Software, TwoChannel
Version	1.49.0
In Bioconductor since	BioC 2.8 (R-2.13) (12 years)
License	LGPL
Depends	R (>= 2.12.0), convert, limma(>= 1.7.0), marray
Imports	stats, grDevices, affy, lattice
LinkingTo
Suggests	BiocStyle, affydata
SystemRequirements
Enhances
URL	http://www.humgen.nl/MicroarrayAnalysisGroup.html
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	TurboNorm_1.49.0.zip (64-bit only)
macOS Binary (x86_64)	TurboNorm_1.49.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/TurboNorm
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TurboNorm
Bioc Package Browser	https://code.bioconductor.org/browse/TurboNorm/
Package Short Url	https://bioconductor.org/packages/TurboNorm/
Package Downloads Report	Download Stats