marray

This is the development version of marray; for the stable release version, see marray.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Exploratory analysis for two-color spotted microarray data

Bioconductor version: Development (3.24)

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>

Citation (from within R, enter citation("marray")):

Yee Hwa Yang with contributions from Agnes Paquet and Sandrine Dudoit. marray: Exploratory analysis for two-color spotted microarray data. doi:10.18129/B9.bioc.marray, R package version 1.91.0, https://bioconductor.org/packages/marray.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("marray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("marray")

marray Overview	PDF	R Script
marrayClasses Overview	PDF	R Script
marrayClasses Tutorial (short)	PDF	R Script
marrayInput Introduction	PDF	R Script
marray Normalization	PDF	R Script
marrayPlots Overview	PDF	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Microarray, Preprocessing, Software, TwoChannel
Version	1.91.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21.5 years)
License	LGPL
Depends	R (>= 2.10.0), limma, methods
Imports
System Requirements
URL	http://www.maths.usyd.edu.au/u/jeany/

Suggests	tkWidgets
Linking To
Enhances
Depends On Me	beta7, CGHbase, convert, dyebias, dyebiasexamples, nnNorm, OLIN, RBM, stepNorm, TurboNorm
Imports Me	arrayQuality, ChAMP, methylPipe, MSstats, MSstatsShiny, nnNorm, OLIN, OLINgui, piano, stepNorm, timecourse
Suggests Me	AgiMicroRna, DEGraph, hexbin, Mfuzz
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	marray_1.91.0.tar.gz
Windows Binary (x86_64)	marray_1.91.0.zip
macOS Binary (big-sur-x86_64)	marray_1.91.0.tgz
macOS Binary (sonoma-arm64)	marray_1.91.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/marray
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/marray
Package Short Url	https://bioconductor.org/packages/marray/
Package Downloads Report	Download Stats