SanityR
R/Bioconductor interface to the Sanity model gene expression analysis
Bioconductor version: 3.24 · Package version: 1.3.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
a Bayesian normalization procedure derived from first principles. Sanity estimates expression values and associated error bars directly from raw unique molecular identifier (UMI) counts without any tunable parameters.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SanityR")Details
| Maintainer | Teo Sakel <teo@intelligentbiodata.com> |
| Author | Teo Sakel [aut, cre] (ORCID: <https://orcid.org/0000-0001-9946-9498>), MCIU/AEI [fnd] (ROR: <https://ror.org/05r0vyz12>, DOI: 10.13039/501100011033) |
| License | GPL (>= 3) |
| URL | https://github.com/TeoSakel/SanityR |
| Bug Reports | https://github.com/TeoSakel/SanityR/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Bayesian, GeneExpression, Normalization, SingleCell, Software |
| Package Short Url | https://bioconductor.org/packages/SanityR/ |
Citation
From within R, enter citation("SanityR"):
Teo Sakel. SanityR: R/Bioconductor interface to the Sanity model gene expression analysis. doi:10.18129/B9.bioc.SanityR, R package version 1.3.0, https://bioconductor.org/packages/SanityR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | SanityR_1.3.0.tar.gz |
| Windows binary (x86_64) | SanityR_1.3.0.zip |
| macOS binary (arm64) | SanityR_1.3.0.tgz |
| macOS binary (x86_64) | SanityR_1.3.0.tgz |
Dependencies
Imports: Rcpp, BiocGenerics, BiocParallel, MatrixGenerics, methods, S4Vectors, scuttle, SingleCellExperiment, SummarizedExperiment
LinkingTo: Rcpp
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), scater, Rtsne