SanityR
This is the development version of SanityR; to use it, please install the devel version of Bioconductor.
R/Bioconductor interface to the Sanity model gene expression analysis
Bioconductor version: Development (3.22)
a Bayesian normalization procedure derived from first principles. Sanity estimates expression values and associated error bars directly from raw unique molecular identifier (UMI) counts without any tunable parameters.
Author: Teo Sakel [aut, cre]
, MCIU/AEI [fnd] (ROR: <https://ror.org/05r0vyz12>, DOI: 10.13039/501100011033)
Maintainer: Teo Sakel <teo at intelligentbiodata.com>
citation("SanityR")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SanityR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SanityR")
Normalizing scRNA-seq data with Sanity | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Bayesian, GeneExpression, Normalization, SingleCell, Software |
Version | 0.99.3 |
In Bioconductor since | BioC 3.22 (R-4.5) |
License | GPL (>= 3) |
Depends | |
Imports | Rcpp, BiocGenerics, BiocParallel, MatrixGenerics, methods, S4Vectors, scuttle, SingleCellExperiment, SummarizedExperiment |
System Requirements | |
URL | https://github.com/TeoSakel/SanityR |
Bug Reports | https://github.com/TeoSakel/SanityR/issues |
See More
Suggests | BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), scater, Rtsne |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | SanityR_0.99.3.tar.gz |
Windows Binary (x86_64) | SanityR_0.99.3.zip |
macOS Binary (x86_64) | SanityR_0.99.3.tgz |
macOS Binary (arm64) | SanityR_0.99.3.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SanityR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SanityR |
Bioc Package Browser | https://code.bioconductor.org/browse/SanityR/ |
Package Short Url | https://bioconductor.org/packages/SanityR/ |
Package Downloads Report | Download Stats |