SANTA
This package is for version 3.22 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SANTA.
Spatial Analysis of Network Associations
Bioconductor version: Development (3.22)
This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).
Author: Alex Cornish [cre, aut]
Maintainer: Alex Cornish <alexcornish88 at gmail.com>
citation("SANTA")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SANTA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SANTA")| Introduction to SANTA | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, Network, NetworkEnrichment, Software |
| Version | 2.45.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (12.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 4.1), igraph |
| Imports | graphics, Matrix, methods, stats |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/alexjcornish/SANTA |
See More
| Suggests | BiocGenerics, BioNet, formatR, knitr, msm, org.Sc.sgd.db, markdown, rmarkdown, RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SANTA_2.45.0.tar.gz |
| Windows Binary (x86_64) | SANTA_2.45.0.zip |
| macOS Binary (x86_64) | SANTA_2.45.0.tgz |
| macOS Binary (arm64) | SANTA_2.45.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SANTA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SANTA |
| Bioc Package Browser | https://code.bioconductor.org/browse/SANTA/ |
| Package Short Url | https://bioconductor.org/packages/SANTA/ |
| Package Downloads Report | Download Stats |